PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06173.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 411aa    MW: 47200.1 Da    PI: 9.6985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06173.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.26.8e-1417971298
                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                ++++l +p +f+++ +++       +l  +sg +W+v++   kk++ +++ +GW++F k+n +   +f++F+++g ++f  +v++f 
  KHN06173.1 17 NTKQLKVPEEFLKHLNKD--LWSNSVLIGPSGDKWQVTI--LKKGNNVYMDNGWSQFLKDNSVVLDEFLLFTYHGGNCF--YVQIFG 97
                457899******655544..4446899************..********************************999999..999986 PP

2B365.11.1e-20312406499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  l+++ +l++++l +  +fa+++  + e   ++ l +++g+sWev++ y +++++    +++GW++Fv++n+L  gD+++F++++ ++++  v++fr+
  KHN06173.1 312 HLLTKCNLERCILLIAAEFARKYI-P-EALEQIYLWNSEGKSWEVRVHYFRNRNTwyAAFKRGWERFVRDNKLMKGDTCIFEVEE-EQGHWSVHIFRT 406
                 567788999**************4.2.33448***************99555555478899*********************755.99999****996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-18698IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-17699IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.252699IPR003340B3 DNA binding domain
SMARTSM010193.1E-131199IPR003340B3 DNA binding domain
CDDcd100171.35E-121196No hitNo description
PfamPF023626.5E-111797IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-24302406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21303407IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-13309407IPR003340B3 DNA binding domain
PROSITE profilePS5086313.916309407IPR003340B3 DNA binding domain
PfamPF023621.1E-17312406IPR003340B3 DNA binding domain
CDDcd100173.66E-17314405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDYHQDNPAV FFTTIKNTKQ LKVPEEFLKH LNKDLWSNSV LIGPSGDKWQ VTILKKGNNV  60
YMDNGWSQFL KDNSVVLDEF LLFTYHGGNC FYVQIFGGNG LERLCRKEAR EEQAATPQFF  120
DLPFSNKASI SDGCEIKKTR QEQASAPSLA RTNKSKQRKT FVGSSHLHES NSYKKDLPSS  180
NKGTLSKGCE IKKTRQEQAA TPSFLRPNKI KQRKTSARSS NLNESKSCQE GQERVATLSW  240
ARTNNYNSTQ RKTSAGSSHL HESNSSKEDL PFSNKASLSK DFPKPQSSIN IECSEACKLA  300
ESFTSRNPHW KHLLTKCNLE RCILLIAAEF ARKYIPEALE QIYLWNSEGK SWEVRVHYFR  360
NRNTWYAAFK RGWERFVRDN KLMKGDTCIF EVEEEQGHWS VHIFRTGCAP H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3216600.0KT321660.1 Glycine max Glyma11g13220 (Glyma11g13220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304570.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0B2PEW80.0A0A0B2PEW8_GLYSO; B3 domain-containing protein
STRINGGLYMA11G13220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-12B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]